Portfolio

My class work for BIMM143 at UC San Diego

Index of Material

Introductory material

• class 04 Intro to R
• class 05 Data exploration and visualization in R
• class 06 Why, when and how of writing your own R functions
• class 07 Introduction to machine learning for Bioinformatics 1
• class 08 Mini project on Cancer
• class 09 Project: Candy mini-project
• class 10 Structural Bioinformatics (pt1)
• class 11 Structural Bioinformatics (pt2 AlphaFold)
• class 12 Genome informatics and high throughput sequencing
• class 13 Transcriptomics, RNA-Seq analysis, and the interpretation of gene lists
• class 14 Project: RNA-Seq mini project
• class 15 Hands-on with Git and GitHub: Created this GitHub repository.
• class 16 Essential UNIX for bioinformatics: Exploring AWS EC2 instances
• class 17 Analyzing sequencing data in the cloud
• class 18 Project: Investigating pertussis resurgence mini-project
• Class 19 Project: Cancer mutation analysis mini-project: Using AlphaFold and MolViewer to explore mutant genes in giving sequences.